Penn Bioinformatics Forum
The Penn Bioinformatics Forum (formerly Philadelphia Bioinformatics Forum) is a monthly seminar series whose purpose is to provide the opportunity for people involved in bioinformatics in the greater Philadelphia region to learn about recent advances in the different areas of this field from experts coming from academia as well as industry. If you would like to be notified of future PBF seminars by e-mail, please send a message to forum@pcbi.upenn.edu stating that you would like to subscribe. All names will be kept confidential. To unsubscribe from the list simply send a request to the same address, stating that you wish to unsubscribe.
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| Laura Landweber |
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| Title: | TBA |
| Date: | Wednesday, December 2, 2009 |
| Time: | 4:00 pm; Reception at 3:45 pm |
| Location: | BRB Auditorium, 421 Curie Boulevard |
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| Xiaole Shirley Liu | Dept of Biostats and Comp Bio, Dana-Farber Cancer Institute, Harvard School of Public Health
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| Title: | Nucleosome Dynamics Defines Transcriptional Enhancers (abstract)
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| Date: | Wednesday, September 16, 2009 |
| Time: | 4:00 pm; Reception at 3:45 pm |
| Location: | BRB Auditorium, 421 Curie Boulevard |
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| Miklos Csuros, Ph.D. | University of Montreal
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| Title: | Inference of homolog gene family evolution from phylogenetic profiles (abstract)
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| Date: | Wednesday, October 7, 2009 |
| Time: | 4:45 pm; Reception at 4:30 pm |
| Location: | BRB Auditorium, 421 Curie Boulevard |
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| PCBI/GCB retreat |
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| Title: | PCBI/GCB retreat will be held instead |
| Date: | Wednesday, November 4, 2009 |
| Time: | |
| Location: | |
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| David Burke, Ph.D. | University of Michigan
| (Home Page Link)
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| Title: | Genome-wide analysis of complex traits in a synthetic population (abstract)
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| Date: | Wednesday, May 13, 2009 |
| Time: | 4:45 pm; Reception at 4:30 pm |
| Location: | CRB Austrian Auditorium |
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| Ysi-Hsiang Hsu, Sc.D. | Harvard University
| (Home Page Link)
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| Title: | Genome-Wide Association Study: Is Larger Always Better? (abstract)
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| Date: | Wednesday, March 18, 2009 |
| Time: | 4:45 pm; Reception at 4:30 pm |
| Location: | BRB Auditorium |
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| Cathy Wu, Ph.D. | Department of Oncology; Lombardi Comprehensive Cancer Center, GUMC
| (Home Page Link)
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| Title: | Integrated Protein Bioinformatics for Genomics, Proteomics and Systems Biology (abstract)
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| Date: | Wednesday, February 18, 2009 |
| Time: | 4:45 pm; Reception at 4:30 pm |
| Location: | BRB Auditorium |
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| Walter Fontana, Ph.D. | Harvard Medical School
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| Title: | Programs as models - a framework for molecular signaling (abstract)
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| Date: | Wednesday, January 21, 2009 |
| Time: | 4:45 pm; Reception at 4:30 pm |
| Location: | BRB Auditorium |
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| Steven Kleinstein, Ph.D | Dept. of Pathology, Yale Univ. School of Medicine
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| Title: | To be announced |
| Date: | Wednesday, November 19, 2008 |
| Time: | 4:45 pm; Reception at 4:30 pm |
| Location: | BRB Auditorium |
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| Robert Knight, Ph.D | Dept. of Chemistry and Biochemistry, Univ. of Colorado at Boulder
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| Title: | To be announced |
| Date: | Wednesday, October 29, 2008 |
| Time: | 4:45 pm; Reception at 4:30 pm |
| Location: | CRB Austrian Auditorium |
| Host: | Frederic Bushman |
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| Dana Pe'er, Ph.D | Department of Biological Sciences, Columbia University
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| Title: | To be announced |
| Date: | Wednesday, October 15, 2008 |
| Time: | 4:45 pm; Reception at 4:30 pm |
| Location: | BRB Auditorium |
| Host: | Dr. Lyle Ungar |
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| Dr. John Storey | Lewis-Sigler Institute, Princeton University
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| Title: | Rethinking Experimental Design in High-dimensional Biology (abstract)
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| Date: | Wednesday, September 10, 2008 |
| Time: | 4:45 pm; Reception at 4:30 pm |
| Location: | CRB Austrian Auditorium |
| Video: | Download a video of this talk. |
| Host: | GCB Students |
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| Noah Rosenberg | Department of Human Genetics, University of Michigan
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| Title: | Genomic Analyses of Population-Genetic Variation in Native Americans (abstract)
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| Date: | Wednesday, April 16, 2008 |
| Time: | 5:15 pm; Reception at 5:00 pm |
| Location: | CRB Auditorium |
| Host: | Junhyong Kim |
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| Daniel Huson | Center for Bioinformatics, Tuebingen University, Germany
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| Title: | Methods for Metagenome Analysis (abstract)
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| Date: | Wednesday, April 2, 2008 |
| Time: | 5:15 pm; Reception at 5:00 pm |
| Location: | CRB Auditorium |
| Host: | Li-San Wang |
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| Jeffrey Townsend | Department of Ecology and Evolutionary Biology, Yale University
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| Title: | Power and resolution in comparative and functional evolutionary genomics (abstract)
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| Date: | Wednesday, March 19, 2008 |
| Time: | 5:15 pm; Reception at 5:00 pm |
| Location: | BRB II/III Auditorium |
| Host: | GCB Students |
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| Stephanie Forrest | Department of Computer Science, University of New Mexico
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| Title: | Agent-based models of evolutionary diseases (abstract)
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| Date: | Wednesday, February 6, 2008 |
| Time: | 5:15 pm; Reception at 5:00 pm |
| Location: | BRB II/III Auditorium |
| Host: | Carlo Maley |
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| Aviv Regev | Department of Biology, MIT / Broad Institute
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| Title: | From modules to mechanisms: Lessons from yeast to mammals |
| Date: | Wednesday, January 16, 2008 |
| Time: | 5:15 pm; Reception at 5:00 pm |
| Location: | BRB II/III Auditorium |
| Host: | GCB Students |
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| Mark Boguski, M.D.,Ph.D. | Former Vice President and Global Head, Genome and Proteome Sciences, Novartis Institutes for Biomedical Research
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| Title: | Proteomics, Systems Biology and Knowledge-mining in Drug and Biomarker Discovery (abstract)
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| Date: | Wednesday, December 5, 2007 |
| Time: | 5:15 pm; Reception at 5:00 pm |
| Location: | CRB Auditorium |
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| Ronald Taylor, Ph.D. | Pacific Northwest National Laboratory (US Department of Energy)
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| Title: | Network Inference and Analysis using the Software Environment for Biological Network Inference (SEBINI) and Collective Analysis of Biological Interaction Networks (CABIN) (abstract)
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| Date: | Wednesday, September 19, 2007 |
| Time: | 5:15 pm; Reception at 5:00 pm |
| Location: | Austrian Auditorium, Clinical Research Building (CRB), 415 Curie Blvd |
| Host: | Chris Stoeckert |
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| John Yin | University of Wisconsin - Madison
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| Title: | From Genome to Organism to Population: Insights from Simulations and Experiments of Virus Growth (abstract)
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| Date: | Wednesday, May 2, 2007 |
| Time: | 5:15 pm; Reception at 5:00 pm |
| Location: | Auditorium, Biomedical Research Building (BRB II/III), 421 Curie Blvd. |
| Host: | Junhyong Kim |
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| Hanlee Ji | Stanford University
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| Title: | The Genetics of Colorectal Carcinoma Prognosis: Development of a Gene Identification Strategy using Novel Technologies (abstract)
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| Date: | Wednesday, November 8, 2006 |
| Time: | 5:15 pm; Reception at 5:00 pm |
| Location: | Austrian Auditorium, Clinical Research Building, 415 Curie Boulevard. |
| Host: | Greg Grant |
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| Mathieu Blanchette | McGill University, McGill Center for Bioinformatics
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| Title: | Genome-wide Computational Prediction of Cis-Regulatory Modules Reveal New Insights into Human Gene Expression Regulation. (abstract)
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| Date: | Wednesday, January 18, 2006 |
| Time: | 5:30 p.m.; Reception at 5:15 p.m. |
| Location: | Auditorium, Biomedical Research Building (BRB II/III), 421 Curie Blvd.
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| Host: | Sridhar Hannenhalli |
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| Ross Hardison | Penn State University, Center for Comparative Genomics and Bioinformatics
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| Title: | Gene regulatory elements discovered by vertebrate genome comparisons (abstract)
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| Date: | Wednesday, March 16, 2005 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Auditorium, Biomedical Research Building (BRB II/III), 421 Curie Blvd.
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| Suzanna Lewis | University of California, Berkeley
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| Title: | The sequencing of a genome, a retrospective. (abstract)
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| Date: | Wednesday, December 8, 2004 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Auditorium, Biomedical Research Building (BRB II/III), 421 Curie Blvd.
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| Deanna Church | NCBI
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| Title: | Genome Assembly, Assessment and Resources at NCBI (abstract)
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| Date: | Wednesday, November 10, 2004 |
| Time: | 3:30 p.m.; Reception at 3:15 p.m. |
| Location: | Reunion Hall, John Morgan Building |
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| Jerzy Jurka | Genetic Information Research Institute
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| Title: | Evolutionary impact of mammalian short interspersed repetitive elements (SINEs) (abstract)
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| Date: | Wednesday, October 13, 2004 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Reunion Hall, John Morgan Building |
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| Jeffery G. Saven | University of Pennsylvania
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| Title: | Physical approaches to protein sequence variability with applications to protein design. (abstract)
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| Date: | Wednesday, September 15, 2004 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Dunlop Auditorium, Stemmler Hall |
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| Michael Zhang | Cold Spring Harbor Laboratory
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| Title: | Prediction, Extraction and Analysis of Mammalian Promoters (abstract)
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| Date: | Wednesday, January 21, 2004 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Auditorium, Biomedical Research Building (BRB II/III), 421 Curie Blvd.
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| Wyeth Wasserman | University of British Columbia, Centre for Molecular Medicine and Therapeutics
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| Title: | Identification and analysis of regulatory control sequences in the human genome. (abstract)
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| Date: | Wednesday, February 18, 2004 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Auditorium, Biomedical Research Building (BRB II/III), 421 Curie Blvd.
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| Andreas Wagner | University of New Mexico, Department of Biology
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| Title: | On the causes of mutational robustness (and other stories). (abstract)
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| Date: | Wednesday, March 17, 2004 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Auditorium, Biomedical Research Building (BRB II/III), 421 Curie Blvd.
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| Peter Karp | SRI International
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| Title: | Bioinformatics Pathway Databases and Algorithms (abstract)
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| Date: | Wednesday, May 5, 2004 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium, Clinical Research Building, 415 Curie Blvd. |
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| Pavel Pevzner | Ronald R. Taylor Professor of Computer Science, University of California at San Diego
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| Title: | Transforming Men into Mice: Lessons from Human and Mouse Genomic Sequences (abstract)
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| Date: | Thursday, March 4, 2004 |
| Time: | 5:15 p.m.; Reception following in BRB auditorium lobby. |
| Location: | Auditorium, Biomedical Research Building (BRB II/III), 421 Curie Blvd.
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| Video: | Download a video of this talk. |
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| Vincent Carey | Channing Laboratory, Brigham and Women's Hospital, Harvard Medical School
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| Title: | Annotation and ontology for statistical genomics. (abstract)
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| Date: | Wednesday, December 10, 2003 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Class of '62 Lecture Hall, John Morgan Building |
| Video: | Download a video of this talk. |
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| Russ B. Altman, M.D. | Director, Biomedical Informatics Training Program, Stanford University Medical Center, Deptartment of Genetics
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| Title: | Pharmacogenetics Knowledge base: challenges in building geno-pheno databases. (abstract)
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| Date: | Tuesday, December 9, 2003 |
| Time: | 5:15 p.m.; Reception following in Austrian auditorium lobby |
| Location: | Robert Austrian Auditorium, Clinical Research Building, 415 Curie Blvd. Talk will also be broadcast to the Conference Center at the Penn State Great Valley campus in Malvern, PA. |
| Video: | Download a video of this talk. |
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| Saurabh Sinha | Rockefeller University, Center for Studies in Physics and Biology
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| Title: | Computational detection of cis-regulatory modules in the Drosophila genome. (abstract)
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| Date: | Wednesday, November 12, 2003 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Class of 62 Lecture Room, John Morgan Building, 3260 Hamilton Walk |
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| Stephen Sherry | NCBI
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| Title: | Haplotypes in dbSNP as a resource for population genetics and molecular epidemiology. (abstract)
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| Date: | Wednesday, October 15, 2003 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Auditorium, Biomedical Research Building (BRB II/III), 421 Curie Blvd.
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| Serafim Batzoglou | Stanford University
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| Title: | Multiple alignment algorithms and comparative genomics (abstract)
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| Date: | Wednesday, September 17, 2003 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Auditorium, Biomedical Research Building (BRB II/III), 421 Curie Blvd.
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| Edward N. Trifonov | University of Haifa, Genome Diversity Center
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| Title: | Species-specific sequence determinants of chromatin structure (abstract)
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| Date: | Thursday, July 3, 2003 |
| Time: | 12:30 p.m. |
| Location: | Biomedical Research Building
421 Curie Blvd. |
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| Tandy Warnow | University of Texas
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| Title: | Progress on Reconstructing Very Large Complex Phylogenies (abstract)
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| Date: | Wednesday, May 7, 2003 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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Dr. Edward M. Marcotte | Asst. Professor, Dept. of Chemistry and Biochemistry & Inst. of Cell and Molecular Biology
University of Texas
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| Title: | Global Analysis of Yeast Protein Pathways, Systems, and Interactions (abstract)
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| Date: | Wednesday, April 16, 2003 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Mark Gerstein | Yale University
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| Title: | Computational Proteomics: Genome-scale Analysis of Protein Structure, Function, & Evolution (abstract)
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| Date: | Wednesday, March 19, 2003 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Inna Dubchak | Life Sciences Division, LBNL
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| Title: | Comparative Genomics Tools for Biological Discovery (abstract)
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| Date: | Wednesday, February 19, 2003 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Sridhar S. Hannenhalli | Celera Genomics
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| Title: | Transcriptional Regulation : Signals, Interactions and modules (abstract)
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| Date: | Wednesday, February 5, 2003 |
| Time: | 11:00am - 12:30pm |
| Location: | Room 252, BRB II/III, 421 Curie Blvd.
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Gregory Gonye | Department of Pathology,
Thomas Jefferson University
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| Title: | Integration of Functional and Structural Genomic Data to Derive Models of Transcriptional Regulation During Neuromodulation (abstract)
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| Date: | Wednesday, January 22, 2003 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
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Isaac S. Kohane, MD | Director, Children's Hospital Informatics Program
Harvard Medical School
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| Title: | Missing the Forest for the Dendrograms (abstract)
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| Date: | Wednesday, December 4, 2002 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Dr Guna Rajagopal | Acting Director, Bioinformatics Institute (Singapore)
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| Title: | TBA |
| Date: | Thursday, November 14, 2002 |
| Time: | 4:00 p.m. |
| Location: | Room 0251 (Mezzanine), BRB II/III, 421 Curie Blvd.
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| Isidore Rigoutsos | IBM Computational Biology Center
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| Title: | Tools for the Elucidation of Associations, Gene Discovery and Protein Functional Annotation (abstract)
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| Date: | Wednesday, November 13, 2002 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Reunion Hall
John Morgan Building
3620 Hamilton Walk |
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Helen Berman | Board of Governors Professor of Chemistry and Chemical Biology
Rutgers, the State University of New Jersey
Director, Protein Data Bank
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| Title: | The Protein Data Bank and Structural Genomics. (abstract)
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| Date: | Wednesday, October 30, 2002 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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Mike Sanderson | U.C. Davis
Professor of Ecology and Evolution
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| Title: | Exploiting large sequence databases to build the phylogenetic tree of life: problems, strategies, and algorithms (abstract)
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| Date: | Wednesday, October 16, 2002 |
| Time: | 5:15 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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Susan Geller | Mathematics Department
Texas A&M University, College Station, Texas
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| Title: | Variance Stabilization, Normalization, and Power Calculations of Microarray Data with Application to Autism (abstract)
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| Date: | Wednesday, September 25, 2002 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Ivo Grosse | Cold Spring Harbor Laboratory
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| Title: | Computational Identification of Promoters and First Exons in the Human Genome (abstract)
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| Date: | Wednesday, May 1, 2002 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Aimee M. Dudley | Harvard Medical School
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| Title: | Measuring absolute expression levels with spotted-glass microarrays (abstract)
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| Date: | Wednesday, April 17, 2002 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| John Reinitz | SUNY Stony Brook
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| Title: | Bioinformatics of Drosophila segmentation (abstract)
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| Date: | Wednesday, March 27, 2002 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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Michael O. Krauthammer, M.D. | Department of Medical Informatics
Columbia-Presbyterian Medical Center
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| Title: | Knowledge Extraction from the Molecular Biology Literature for the Generation of Signal Transduction Networks (abstract)
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| Date: | Wednesday, February 20, 2002 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Nikos Kyrpides | Integrated Genomics
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| Title: | Comparative Analysis: the Key to Interpreting Genomes (abstract)
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| Date: | Wednesday, January 23, 2002 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| David Finkelstein | Affymetrix
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| Title: | Normalization and measurement error in 2 color cDNA microarrays (abstract)
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| Date: | Wednesday, December 5, 2001 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Class of '62 Lecture Hall
John Morgan Building |
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| Sante Gnerre | Whitehead Institute, MIT
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| Title: | Arachne - A Whole Genome Shotgun Assembly (abstract)
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| Date: | Wednesday, November 14, 2001 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Michael Stanhope and James Brown | GlaxoSmithKline
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| Title: | Debugging the human genome and reconstructing the universal tree of life (abstract)
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| Date: | Wednesday, October 24, 2001 |
| Time: | 5:15p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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Nikolay A. Kolchanov | Institute of Cytology and Genetics
Siberian Branch of the Russian Academy of Sciences
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| Title: | Databases on gene expression regulation: TRRD and GeneNet (abstract)
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| Date: | Wednesday, May 30, 2001 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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Gary Benson | Department of Biomathematical Sciences
Mount Sinai School of Medicine
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| Title: | Detection and Analysis of Repetitive Features in Nucleotide Sequences (abstract)
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| Date: | Monday, April 16, 2001 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Kevin Coombes | University of Texas M. D. Anderson Cancer Center, Houston
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| Title: | Detecting subtle differences in gene expression using microarrays (abstract)
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| Date: | Wednesday, March 21, 2001 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Sandrine Dudoit | Department of Biochemistry, Stanford University
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| Title: | Statistical methods for identifying differentially expressed genes in microarray experiments (abstract)
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| Date: | Wednesday, February 21, 2001 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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Carol Bult | Associate Staff Scientist
The Jackson Laboratory
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| Title: | Mouse Genome Informatics (MGI): Toward an integrated view of the mouse genome (abstract)
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| Date: | Wednesday, January 24, 2001 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Stephen Bryant | NCBI
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| Title: | A Conserved Domain Database |
| Date: | Wednesday, December 13, 2000 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | BRB II/III, First Floor Auditorium |
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| Webb Miller | Penn State University
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| Title: | Mouse-Human Genomic Sequence Comparison (abstract)
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| Date: | Wednesday, November 15, 2000 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Yidong Chen | NHGRI
|
| Title: | Informatics and Statistics of cDNA Microarray Analysis (abstract)
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| Date: | Wednesday, October 18, 2000 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Eugene V. Koonin | Senior Investigator, NCBI
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| Title: | Comparative genomics: Is it changing the paradigm of evolutionary biology? (abstract)
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| Date: | Wednesday, September 20, 2000 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Class of '62 Lecture Hall
John Morgan Building
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| Thomas Wiehe | Max Planck Institute for Chemical Ecology, Department of Genetics and Evolution
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| Title: | Comparative Genomics: Homology Based Gene Prediction (abstract)
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| Date: | Wednesday, May 10, 2000 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Laura Landweber | Princeton University
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| Title: | From Scrambled Genes to Chess: The evolution of DNA and RNA computing (abstract)
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| Date: | Wednesday, March 22, 2000 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
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| Andrea Califano | Program Director, IBM Computational Biology Center
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| Title: | Functional Genomics Applications of Pattern Discovery Algorithms (abstract)
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| Date: | Wednesday, February 16, 2000 |
| Time: | 12 noon (please note the change in time); Reception at 11:45 a.m. |
| Location: | BRB II/III, First Floor Auditorium |
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| John Quackenbush | The Institute for Genomic Research (TIGR)
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| Title: | Analysis of Microarray Expression Data (abstract)
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| Date: | Wednesday, January 19, 2000 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | |
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| Eric Siggia | Center for Studies in Physics and Biology Rockefeller University & Department of Physics Cornell University
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| Title: | Building a Dictionary for Genomes: Statistical Analysis of Transcriptional Regulation (abstract)
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| Date: | Wednesday, December 1, 1999 |
| Time: | 2:30 p.m.; Reception at 2:15 p.m. |
| Location: | |
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| Temple F. Smith | Director, BioMolecular Engineering Research Center College of Engineering Boston University
|
| Title: | Nature's Legos Protein Domains: Functional versus structural (abstract)
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| Date: | Wednesday, September 15, 1999 |
| Time: | 5:10 p.m.; Reception at 5:00 p.m. |
| Location: | |
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| Mark Boguski | NCBI/ NIH
|
| Title: | Closing the Gap Between Sequence and Function: the Frontier of Computational Biology and Functional Genomics |
| Date: | Monday, April 12, 1999 |
| Time: | 2 p.m. |
| Location: | |
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| John Aach | Lecturer, Dept. of Genetics Harvard Medical School
|
| Title: | Databases for functional genomics (abstract)
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| Date: | Wednesday, March 17, 1999 |
| Time: | 5:15 p.m.; Reception at 5:00 p.m. |
| Location: | Leidy Labs Room 10 |
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| James W. Fickett | Director of Bioinformatics Research SmithKline Beecham Pharmaceuticals
|
| Title: | Forming the Human Gene Catalog (abstract)
|
| Date: | Wednesday, January 20, 1999 |
| Time: | 5:15 p.m. |
| Location: | Robert Austrian Auditorium
Clinical Research Building
415 Curie Blvd. |
| |
| Charles Lawrence | Chief, Biometrics Laboratory, Wadsworth Center
|
| Title: | A Bayesian MCMC Algorithm for Mining Protein Databases: Structural Prediction of Human Glutamate Decarboxylase (abstract)
|
| Date: | Wednesday, November 18, 1998 |
| Time: | 5:10 p.m. |
| Location: | |
| |
| Nathan Goodman | Sr. Staff Scientist, The Jackson Laboratory
|
| Title: | LabBase and LabFlow: Data and Workflow Management for Large Scale Biology Research Laboratories (abstract)
|
| Date: | Wednesday, April 15, 1998 |
| Time: | 5:10 p.m. |
| Location: | |
| |
| Lawrence Hunter | National Library of Medicine, NIH
|
| Title: | Machine Learning in Molecular Biology: Outlook and Lessons Learned (abstract)
|
| Date: | Wednesday, April 1, 1998 |
| Time: | 5:10 p.m. |
| Location: | IRCS Large Seminar Room |
| |
| Steven Salzberg | Assistant Professor The Institute for Genomic Research and Johns Hopkins University
|
| Title: | Microbial Gene Finding with Interpolated Markov Models (abstract)
|
| Date: | Wednesday, March 4, 1998 |
| Time: | 5:00 p.m. |
| Location: | IRCS Large Seminar Room |
| |
| David States M.D. | Associate Professor and Director Institute for Biomedical Computing Washington University in St. Louis
|
| Title: | Structure Based Sequence Comparison; Identifying Functional Regions of the Genome (abstract)
|
| Date: | Wednesday, February 4, 1998 |
| Time: | 5:00 p.m. |
| Location: | |
| |
| Gary Stormo | University of Colorado
|
| Title: | Specificity in Protein-DNA Interactions: Experimental and Computational Approaches (abstract)
|
| Date: | Wednesday, January 14, 1998 |
| Time: | |
| Location: | |
| |
| Michael Q. Zhang | Cold Spring Harbor Laboratory
|
| Title: | Searching for Protein Coding in the Human Genome (abstract)
|
| Date: | Wednesday, December 3, 1997 |
| Time: | |
| Location: | |
| |
| Michael Liebman | Director of Bioinformatics, Wyeth-Ayerst Research
|
| Title: | Clinical Bioinformatics- where are we headed? (abstract)
|
| Date: | Wednesday, November 19, 1997 |
| Time: | |
| Location: | |
| |
| Michael Kohn | Laboratory of Computational Biology and Risk Analysis National Institute of Environmental Health Sciences
|
| Title: | Use of "MetaNet" Graph Theoretical Models to Identify Sites of Feedback Regulation in Metabolic Pathways (abstract)
|
| Date: | Wednesday, October 15, 1997 |
| Time: | 5:00 p.m. |
| Location: | |
| |
| Ewan Birney | Sanger Centre
|
| Title: | Dynamite: A language for alignment algorithms (abstract)
|
| Date: | Wednesday, September 17, 1997 |
| Time: | |
| Location: | |
